You can view the source code for this workflow in the repository

This repository contains all the scripts and data necessary to reproduce the work for JRC TEMBA project.

To run this analysis you need to install GLPK and a solver such as CBC, CPLEX or Gurobi

You should also have Python >=3.6 environment setup with the following dependencies ideally using miniconda so that snakemake can manage custom environments for each of the workflow tasks:

• pandas
• xlrd
• snakemake
• plotly
• cufflinks-py

To run the workflow with snakemake, type the command snakemake.

To perform a dry run, use the flag -n and to run the workflow in parallel, use the flag -j and pass the (optional) number of threads to use e.g. snakemake -j 8.

• Input data are stored in .xlsx Excel files in the input_data folder
• A modified OSeMOSYS model file is stored in model folder
• Temporary output data is stored in the output_data folder
• Final results are stored in results
• All the scripts for intermediate processing are stored in the scripts folder

• Data is released under the terms of a CC-BY 4.0 License Agreement.
• A modified copy of OSeMOSYS is redistribruted in this repository under Apache 2.0 license agreement, a copy of which can be found in the model folder

If you wish to use, extend or otherwise build upon the work contained within this repository, you are welcome to do so, provided you abide by the terms of the licenses detailed above.

Please cite this work in the following manner:

Pappis, I., Sridharan, V., Howells, M., Medarac, H., Kougias I., Sánchez G. R., Shivakumar, A., Usher, W., 2019,
Conflicting objectives of energy development and water security in Africa