wyp1125 Goto Github PK

additive_epistasis

Collection of R, Python, Perl and Tensorflow programs to simulate and detect the additive epistasis genetic model

antepiseeker

A C++ tool for detecting epistatic interactions for case-control studies using a two-stage ant colony optimization algorithm

antepiseeker2

Extended AntEpiSeeker algorithm relating epistasis detection to biological pathway analysis using ant colony optimization

aws-obesity-risk-prediction

aws-serverless-fintech

Programs for a serverless model based fintech app

biostatistics

R programs for biostatistics models and TLF

ccnn-image-classifier

Configurable Convolutional Neural Networks for Image Classification using Python and TensorFlow. Wrapper scripts are also provided.

comm_datasci_procedures

A toolkit for common data science procedures which can be applied to different domains such as marketing, fraud detection and e-commerce.

compute-grs

A small Perl script for computing genetic risk scores for obesity from a VCF file

dnn-precision-medicine

Deep neural network (DNN) models for a precision medicine problem using Python and TensorFlow.

emr-pyspark-life-styling-analysis

lsoss

An R package for detection of cancer outlier differential gene expression

lung_cancer_risk

A full-stack deep learning solution for evaluating lung cancer risks

machine-learning-libsvm-lasso

A compile of Perl and R scripts for applying machine learning techniques including SVM and LASSO

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

mcscanx-transposed

Source code for my Bioinformatics paper "MCScanX-transposed: detecting transposed gene duplications based on multiple colinearity scans".

ngs-clinical-pipelines

A compile of Perl scripts and Linux commands for NGS clinical pipelines

ngs_pipeline_utilities

A python toolkit to facilitate development, regression testing and deployment of NGS pipelines

php-market-data-visualization

PHP codes to visualize realtime stock data via candlestick and RSI chart.

php-mysql-snpxge2

PHP code for my Bioinformatics paper "SNPxGE2: a database for human SNP-coexpression associations".

pyspark-mr-svm-biomed

PySpark scripts for applying MapReduce and SVM to high-throughput biomedical datasets.

sas-biostat-tools

SAS scripts for various biostatistics applications. A complete pipeline for analyzing microarray data using linear models is included.

sas-clinical-trials-toolkit

SAS scripts for clinical trials applications including generating SDTM domains, ADaM datasets, and Define.xml files

seqenhdl

Multiple machine learning and deep learning models for sequence-based enhancer prediction

serverless-ml-models

sklearn-bank-marketing

Build multiple machine learning models (Nearest Neighbors, SVMs, Decision Tree, Random Forest, Naive Bayes, etc.) for bank marketing data using sklearn and pandas.

xsyn

xSyn: a software tool for identifying sophisticated three-way interactions from cancer expression data