site URL: https://faylward.github.io/bioinformatics_tutorials/

Currently in development!

These are a series of bionformatics tutorials I have developed, primarily for teaching Systems Biology 3036 at Virginia Tech and also for archiving smaller protocols used in my lab group.

The "chapters" (or tutorials) below are intended for use at the introductory level (i.e., little or no bioinformatics knowledge). They presume a Unix or Unix-like environment (primarily Ubuntu or CentOS).

Ch 01: Introduction to Unix

Ch 02: Parsing FASTA Files

Ch 03: Gene Prediction

Ch 04: Homology Searches

Creating your own bin folder and storing binaries there
Writing simple python scripts to parse text files
Mummer plots and whole-genome alignment
ANI and AAI
Recruitment plots
multi-locus phylogeny workflow