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simple django app for blast search

License: MIT License

Makefile 0.62% Python 76.59% CSS 1.52% HTML 20.66% Shell 0.61%

django-blastplus's Introduction

django-blastplus

A simple Django app to conduct web-based homology search with blast+.

Requirements

Blast+
Python 3
Django 2.0
Biopython

Install

pipenv install

Download

Quick start

Add "blastplus" to your INSTALLED_APPS setting like this::

INSTALLED_APPS = (
        'blastplus',
)

Include the polls URLconf in your project urls.py like this::

url(r'^blast/', include('blastplus.urls')),

You can modify some defaults in blastplus.settings
- e.g. modify path to nucleotide database::

BLAST_DB_NUCL_LIST = [
            {
                "name": "sample1",
                "path": 'blastplus/sampledata/sample_db1/sample_db',
                "desc": "Sample database 1",
                "annotated": False, },
            {
                "name": "sample2",
                "path": 'blastplus/sampledata/sample_db2/sample_db2',
                "desc": "Sample database 2",
                "annotated": False, },
        ]

Visit search pages:

Blastn http://127.0.0.1:8000/blast/blastn
TBlastn http://127.0.0.1:8000/blast/tblastn
Blastp http://127.0.0.1:8000/blast/blastp
Blastx http://127.0.0.1:8000/blast/blastx

Example

See our NewtBase portal with django-blastplus app inside

http://newtbase.eko.uj.edu.pl/blast/blastn/

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