Code for the distributed working memory model of mouse brain in Ding et al., “ Cell type-specific connectome predicts distributed working memory activity in the mouse brain", eLife.

Please run jupyter notebooks in the following order. It will generate figures or data and might take long time.
loadDataProcessing.ipynb
mainSim.ipynb
makeFigures.ipynb
loopMeasurement.ipynb
singleAreaLesion.ipynb
mainSim-ThCX.ipynb
mainSim-ThCXinhibitThalamus.ipynb
mainSim-ThCXnoThalamus.ipynb
makeFigures_thal.ipynb
processMulti.ipynb

Panels in Figure 1 can be acquired from loadDataProcessing.ipynb and makeFigures.ipynb
Panels in Figure 2 can be acquired from makeFigures.ipynb
Panels in Figure 3 can be acquired from mainSim.ipynb
Panels in Figure 4 can be acquired from makeFigures.ipynb
Panels in Figure 5 can be acquired from makeFigures_thal.ipynb
Panels in Figure 6 can be acquired from loopMeasurement.ipynb
Panels in Figure 7 can be acquired from singleAreaLesion.ipynb
Panels in Figure 8 can be acquired from singleAreaLesion.ipynb
Panels in Figure 9 can be acquired from processMulti.ipynb