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Python Computing for Science

An Undergraduate/Graduate Seminar Course at UC Berkeley (AY 250)

Wheeler 221: Monday 2 - 5 PM FALL 2012 (CCN #060802)

Synopsis

Python is becoming the de facto superglue language for modern scientific computing. In this course we will learn Pythonic interactions with databases, imaging processing, advanced statistical and numerical packages, web frameworks, machine-learning, and parallelism. Each week will involve lectures and coding projects. In the final project, students will build a working codebase useful for their own research domain.

This class is for any student working in a quantative discpline and with familiarily with Python. Those who completed the Python Bootcamp or equivalent will be eligible.

Course Schedule

Date Content Leader
Aug 27 Advanced Python Language Concepts (geared towards Boot Camp graduates) Josh
Sep 3 holiday
Sep 10 Advanced versioning, application building (optparse), debugging & testing Isaac
Sep 17 (matplotlib) Advanced plotting and data vizualization, mayavi Fernando
Sep 24 scipy, numpy, stats Berian/Brad
Oct 1 scikits: image, learn Josh/Joey
Oct 8 interacting with the world (xml-rpc, urllib, sending and receiving email, serial) Isaac
Oct 15 database interaction, large datasets (HDF5) Josh
Oct 22 GUI (Tkinter, GTK, Traits) Josh
Oct 29 parallelization (ipython), cuda Fernando/Paul
Nov 5 web-frameworks (CGI), Flask/Bottle Josh
Nov 12 holiday
Nov 19 Symbolic, mathematical and Bayesian programming: simpy, sage, R, rpy2, pyMC/emc Berian/Joey
Nov 26 Cython; wrapper around legacy code -- FORTRAN, C, etc Erik
Onward final project work

Workflow

Each Monday we will be introducing a resonably self-contained topic with two back-to-back lectures. In between a short (~20 minute) breakout coding session will be conducted. Homeworks will require you to write a large (several hundred line) codebase.

There will be a regular help session every Friday morning before homeworks are due, 10am-12 in Evans 481. Email Isaac with any questions if you cannot attend.

Contact

Email us at [email protected] or contact the professor directly ([email protected]). You can also contact the GSI, Isaac, at ([email protected]. Auditing is not permitted by the University but those wishing to sit in on a class or two should contact the professor before attending.

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