We provide all datasets used in our paper, including simulated and experimental data. We also provide an example datasets here(/BDGRN/data/example
).
You can start with example.R
, which can directly used our algorithm to predict gene association on the example datasets, its outputs are AUPRC/AUROC ratios and EPR (early precision ratio).
- If you want to take advantage of our BDGRN to compute AUPRC/AUROC/EP ratio, you can run
example.R
. - In addition, the specific calculation function is defined in
computer.R
. - The
density.csv
is density of different network in/BDGRN/data/