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attfold's Introduction

ATTfold

ATTfold method has 5 folders, we will introduce them separately.
The following is the file distribution and introduction in each folder.

Model construction and evaluation index establishment

ATTfold

common

config.py
utils.py

ATTfold_model.py
data_generator.py
evaluation.py
README.md

Preprocessing of RNA sequence and structure data

data_preprocess

rnastralign_512

test_no_redundant_512.pickle

rnastralign_data.py
test_de_redundancy.py
README.md

ATTfold model training

experiment_rnastralign

map
ATTfold_learning.py
config.json
save_v.py
README.md

Saved file of ATTfold model training parameters

models_ckpt

ATTfold_0.809.pt
README.md

Original data set

raw_data

README.md

attfold's People

Contributors

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Stargazers

avatar Felix Clark avatar

Watchers

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Forkers

heiyou973

attfold's Issues

Predict

Hi,

Thank you for the awesome work and sharing the codes. May i request you to please share the predict script (to generate CT file for a given new sequence)?. that will be great.

Thank you in advance.

Regards,
Suneel

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