yuqi92 / deep-patient-representation-mimiciii-multitask Goto Github PK

Hi @Yuqi92 ,
Are you going to provide the word embedding pre-trained model? If not, can you provide the code to generate that? Thanks.

Hi,

Appreciate the public release of the code for this project! It seems to me that something might be missing, however. Installing everything, downloading the mimic data, and then running mimic_preprocessing.py runs into a list of issues that don't seem like they could have ever worked on their own. For instance, subject_instance is commented out in HP, HP never has a defined attribute called result_csv_dead_los, and the last line in mimic_preprocessing.py isn't valid python syntax. There's a whole series of other issues that makes me think I'm missing a config of some sort.

Am I missing something to run this code? If I am, I'd really appreciate any help! I thought the paper was really solid and a working implementation would be very helpful towards a paper I'm working on.