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pato-rose's Issues

hard coded path to c.owl

For generated ut.cpp.owl, it has a line:
Import(file:///home/yzhao30/openk/ontology/c.owl)

This is not portable for users. Please check if there is a better solution.

@yzhao30

Illegal redeclarations of entities in generated ut.cpp.owl

------------------------------------ Protégé -----------------------------------
Protégé Desktop
Version 5.0.0, Build beta-24

----------------------------------- Platform -----------------------------------
Java: JVM 1.8.0_40-b26 Memory: 466M
Language: en, Country: US
Framework: Apache Software Foundation (1.7)
OS: linux (3.10.0-327.4.4.el7.x86_64)
Processor: x86-64

------------------------------------ Plugins -----------------------------------
Plugin: Cellfie Protege 5.0+ Plugin (2.0.0.beta-7)
Plugin: OWL Code Generation Plug-in (2.0.0)
Plugin: Existential Query (2.0.0)
Plugin: Explanation Workbench (3.0.0)
Plugin: OntoGraf (2.0.2)
Plugin: DL Query (3.0.1)
Plugin: HermiT (1.3.8.413)
Plugin: OWLDoc (3.0.2)
Plugin: OWLViz (5.0.1)
Plugin: OWLAPI RDF Library (2.0.2)
Plugin: Protege SPARQL Plugin (2.0.1)
Plugin: SWRLTab Protege 5.0+ Plugin (1.0.0.beta-19)

    OWLAPI RDF Library Plugin has no plugin.xml resource 

OWL API Version: 4.2.1.20160306-0033
------------------------------- Loading Ontology -------------------------------
Loading ontology from file:/home/liao6/workspace/openk/PATO-ROSE.git/tools/rosePrgKnowledgeBuilder/ut.cpp.owl
Loading OntologyID(Anonymous-0) from file:/home/liao6/workspace/openk/PATO-ROSE.git/tools/rosePrgKnowledgeBuilder/ut.cpp.owl

Loading OntologyID(OntologyIRI(file:///home/liao6/workspace/openk/PATO-ROSE.git/ontology/c.owl) VersionIRI()) from file:///home/liao6/workspace/openk/PATO-ROSE.git/ontology/c.owl
dumping remaining triples
done dumping remaining triples
Illegal redeclarations of entities: reuse of entity http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasValue in punning not allowed [Declaration(DataProperty(http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasValue)), Declaration(ObjectProperty(http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasValue))]
Illegal redeclarations of entities: reuse of entity http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasName in punning not allowed [Declaration(ObjectProperty(http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasName)), Declaration(DataProperty(http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasName))]
Illegal redeclarations of entities: reuse of entity http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasValue in punning not allowed [Declaration(DataProperty(http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasValue)), Declaration(ObjectProperty(http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasValue))]
Illegal redeclarations of entities: reuse of entity http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasName in punning not allowed [Declaration(ObjectProperty(http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasName)), Declaration(DataProperty(http://www.semanticweb.org/yzhao30/ontologies/2015/7/c#hasName))]
Loading for ontology and imports closure successfully completed in 3667 ms

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