Problems if not all samples have the same chromosomes about bindingsitefinder HOT 2 CLOSED

I think a fix for the .collapsSamples function would probably be
pSum = p[[1]]
names = unique(unlist(sapply(p, names)))
for (i in 2:length(p)) {
pSum = c(pSum, p[[i]])
pSum = split(pSum, names(pSum))
pSum = lapply(pSum, function(x){
if (length(x)==2){
x = x[[1]] + x[[2]]
}
})
}

from bindingsitefinder.

Hi, my fault. I updated to BindingSiteFinder Version 1.4.0 and this seems to solve the problem.

bds = BSFDataSetFromBigWig(ranges = pureclip_sites$PURB_oe_FLAG_merged_pureclip_sites_mtp001.bed, meta = meta)
Input ranges are not sorted, sorting for you.
Fixed ranges input, removing chr: GL000009.2 GL000195.1 GL000205.2 GL000213.1 GL000214.1 GL000219.1 GL000220.1 GL000224.1 GL000251.2 GL000252.2 GL000253.2 GL000254.2 GL000255.2 GL000256.2 ...

from bindingsitefinder.