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czicheck's Introduction

CZICheck

License: MIT REUSE status CMake CodeQL MegaLinter

CZICheck is a command-line application developed using libCZI, enabling users to assess the integrity and structural correctness of a CZI document.

Checking the validity of a CZI becomes more complex the closer one is to the application domain (e.g. application-specific metadata). So this console application is more of a utility to help users who are directly using libCZI, or its python wrapper pylibCZIrw, than it is an official validation tool for any ZEISS-produced CZIs.

CZICheck runs a collection of checkers which evaluate a well defined rule. Each checker reports back findings of type Fatal, Warn, or Info.

Please check the tool's internal help by running CZICheck.exe --help and check additional documentation here.

Guidelines

Code of Conduct
Contributing

Disclaimer

ZEISS, ZEISS.com are registered trademarks of Carl Zeiss AG.

czicheck's People

Contributors

felixs90 avatar ptahmose avatar m-aximilian avatar

Stargazers

Rafael Camacho avatar Alexandre Carisey avatar KUNDI Umar Muhammad avatar Mustafa Al Ibrahim avatar Rudi avatar

Watchers

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czicheck's Issues

checker which "decodes data"

For CZIs containing compressed data, it would be beneficial to have a checker which actually decodes the data (and thereby checks for the correctness of the compressed data). In addition, consistency checks like "whether size and pixeltype (esp. in case of JPGXR) matches the CZI-level-description" should be done.

enable support for libCZI's http-support

libCZI recently gained functionality to access CZIs via http/https-protocol.

This functionality should be made available in CZICheck.

A new command-line switch should be added to CZICheck allowing to specifiy the reader - c.f. CZICmd and the option "--source-stream-class".

Specialized checker for "topology data"

CZIs can contain topology data, and there is specific metadata describing this kind of data.
Idea is to have a checker dedicated validating the semantic of the topology metadata.

This checker should include at least:

  • do the referenced channels exist
  • do the referenced channels have the appropriate pixel type
  • is there no superfluous additional data given within the TopographyDataItems-XML-nodes
  • is "StartC" attribute present

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