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Zonglei Zhen's Projects

abat icon abat

Allen Brain Atlas Tools

app-dipy-afq icon app-dipy-afq

This service takes in a nifti and tck output from Multishell Tractography w/ CSA or SHORE and outputs the CST and ILF segmentations in .tck file format of both the left and right hemispheres.

bat icon bat

Behavior Analysis Toolbox

deep-retina icon deep-retina

deep-retina is a project to build a convolutional neural network that can predict retinal ganglion cell responses to natural stimuli with high accuracy.

dnnbrain icon dnnbrain

Use DNN to study the brain and use brain measurement to evaluate DNN

dstrf icon dstrf

MEG/EEG analysis tools : Direct estimation of TRFs over the source space

eccentricity icon eccentricity

implementation of eccentricity-dependent model for object recognition

fat icon fat

fasciculus analysis tools

fixel icon fixel

Script for fixel analysis using MRtrix3

gbc icon gbc

Global brain connectivity pattern analysis

hsom icon hsom

Hierarchical self-organizing maps for unsupervised pattern recognition

lnpy icon lnpy

Python code for estimation of linear-nonlinear model parameters

matni icon matni

Matlab library for neuroimaging data analysis

meg-raven icon meg-raven

Characterize brain dynamics in RAVEN problem solving with MEG

micaopen icon micaopen

Open Scripts / Pipelines from the Multimodal Imaging and Connectome Analysis Lab

minisom icon minisom

:red_circle: MiniSom is a minimalistic implementation of the Self Organizing Maps

mtrf-toolbox icon mtrf-toolbox

A MATLAB Package for Relating Neural Signals to Continuous Stimuli

nibrain icon nibrain

a neuroscience-oriented MR data analysis toolbox

pyfat icon pyfat

Fasciculus Aanalysis Tools in Python

pymtrf icon pymtrf

Translation of the mtrf-Toolbox for Matlab (see https://github.com/mickcrosse/mTRF-Toolbox).

rbfn icon rbfn

Radial Basis Function Network - PyTorch

rdk icon rdk

Random Dot Kinematogram Project - PSU, SLEIC, Gilmore Lab

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