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bci-challenge-ner-2015

Code and documentation for the winning solution at the BCI Challenge @ NER 2015 : https://www.kaggle.com/c/inria-bci-challenge

bcl2fastq

my learning repository about bcl2fastq from illumina

benchmarkio.jl

Bechmark IO

bfc

High-performance error correction for Illumina resequencing data

bhtsne

Barnes-Hut t-SNE

bhtsne.jl

Julia interface to Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

bigdata

Collalboration Hub for the NYU's Big Data: Large Scale Machine Learning course

bindeps.jl

Tool for building binary dependencies for Julia modules

biopython

Official git repository for Biopython (converted from CVS)

bioseq.jl

Julia's package for working on Bioinformatics with DNA, RNA and Protein Sequences

blis

BLAS-like Library Instantiation Software Framework

blocks

A Theano framework for building and training neural networks

boltzmann.jl

Restricted Boltzmann Machines in Julia

bowtie2

A fast and sensitive gapped read aligner

bwa

Burrow-Wheeler Aligner for pairwise alignment between DNA sequences

bwa-dp

Rewrite BWA from C to Python, C++ and CUDA

bwt-benchmark

Framework to benchmark BWT construction algorithms

caffe

Caffe: a fast open framework for deep learning.

caret

caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

ccall.jl

Various patterns for wrapping C library in Julia useful for making automatic wrapper

ccbench

A tool for measuring the cache-coherence latencies of a processor, i.e., the latencies of loads, stores, CAS, FAI, TAS, and SWAP.

ccv

C-based/Cached/Core Computer Vision Library, A Modern Computer Vision Library

ccw_tutorial_theano

Common Code Workflow tutorial on Theano

char-rnn.jl

RNNs in Julia

chgemm_sse4_u8s8

clang.jl

Julia interface to libclang and C wrapper generator

cld

A software for the multispecies design of CRISPR/Cas9 libraries

clusteralgorithmsforbio

Cluster Algorithms For Bio

clusterofgenemutation

Cluster Of Gene Mutation

cnmem

A simple memory manager for CUDA designed to help Deep Learning frameworks manage memory