zhuakexi Goto Github PK
Type: User
Bio: Ph.D. student of Peking University
Location: Beijing. China
Type: User
Bio: Ph.D. student of Peking University
Location: Beijing. China
Software to compute reproducibility and quality scores for Hi-C data
Draws chemicals in Blender using common input formats (smiles, molfiles, cif files, etc.)
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
download sequencing result from solargenomics and do md5sum check
ChIP-seq peak-calling, QC and differential analysis pipeline (Snakemake port of the nextflow pipeline at https://nf-co.re/chipseq).
Fast alignment and preprocessing of chromatin profiles
clean duplicate contacts or promiscuous legs in pairs file
dip-c workflow without rna
Notebooks on dealing with some annoying and tedious coding obstacles.
A cool place to store your Hi-C
The tools for your .cool's
Tools to analyze Dip-C (or other 3C/Hi-C) data
Java tools for analyzing Drop-seq data
Fit-Hi-C is a tool for assigning statistical confidence estimates to chromosomal contact maps produced by genome-wide genome architecture assays such as Hi-C.
use fit-Hi-C to call significant interactions
A fast reverse proxy to help you expose a local server behind a NAT or firewall to the internet.
Haplotype VCF comparison tools
software tools for haplotype assembly from sequence data
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
A Python implementation for BH-FDR and HiCCUPS
R package to evaluate reproducibility of Hi-C data
Simple library/pipeline to generate and handle Hi-C data
Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer
HiC for copy Number variation and Translocation detection
scripts for hires pipline
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.