Giter VIP home page Giter VIP logo

zipkinlab / saunders_etal_2016_geb Goto Github PK

View Code? Open in Web Editor NEW
1.0 4.0 1.0 337 KB

Saunders, S.P., Ries, L., Oberhauser, K.S., & Zipkin, E.F. (2016) Evaluating confidence in climate-based predictions of population change in a migratory species. GEB. 25: 1000-1012.

License: Mozilla Public License 2.0

R 100.00%
climate-change danaus-plexippus forecasting migratory monarch-butterflies negative-binomial-model prediction spatial-synchrony

saunders_etal_2016_geb's Introduction

Sarah P. Saunders, Leslie Ries, Karen S. Oberhauser, and Elise F. Zipkin

Global Ecology and Biogeography

Please contact the first author for questions about the code or data: Sarah P. Saunders ([email protected])


Abstract

Aim Forecasting ecological responses to climate change is a common objective, but there are few methods for evaluating confidence in such predictions. For migratory species, in particular, it is also essential to consider the extent of spatial synchrony among separate breeding populations in range-wide predictions. We develop a quantitative method to evaluate the accuracy of climate-based ecological predictions and use this approach to assess the extent of spatio-temporal synchrony among distinct regions within the breeding range of a single migratory population.
Location We model weekly site-specific summer abundances (1996โ€“2011) of monarch butterflies (Danaus plexippus) in the Midwestern USA as a function of climate conditions experienced during a shared spring migration/breeding phase in Texas and separate summer recruitment periods in Ohio and Illinois.
Methods Using negative binomial regression models, we evaluate spatiotemporal synchrony between monarchs in the two states and develop a novel quantitative assessment approach to determine the temporal predictive strength of our model with Bayesian P-values.
Results Monarchs breeding in the Midwest exhibit spatio-temporal synchrony in Ohio and Illinois; cooler spring temperatures, average to above average precipitation in Texas and cooler than average summer temperatures are associated with higher population abundances in both states. At least 10 years of data are needed for adequate model predictability of average future counts. Because annual spring weather conditions in Texas primarily drive yearly abundances, as opposed to localized summer effects, year-specific counts are often difficult to predict reliably, specifically when predictive spring conditions are outside the range of typical regional conditions.
Main conclusions Our assessment method can be used in similar analyses to more confidently interpret ecological responses to climate change. Our results demonstrate the relative importance of climatic drivers in predicting abundances of a migratory species and the difficulties in producing reliable predictions of animal populations in the face of climate change.

Data (proprietary; descriptions provided here for context)

SiteEffects_OH96to11.csv - Site-level data for sites where monarchs were surveyed in Ohio and Illinois. The rows contain the data for each of the 117 sites in the study area. The columns contain 1) Latitudes and Longitudes of each site (first 2 columns); 2) Site IDs; 3) the percent of each site considered 'open' habitat (% Open column; see main text for description of this covariate; and 4) average growing degree days (GDD) measured during weeks 10-28 (avgGDD10-28NEW) at each site.

SiteYear_OH96to11.csv - Site-year-level data for each site-year combination. Each row is a site-year combination (columns 1 and 2) and the additional columns contain: 1) accumulated GDD during weeks 10-28 in each year at each site; and 2) the average Palmer Drought Severity Index (PDSI) during weeks 10-28 during each year at each site.

SurveyData_OH96to11.csv - This file contains all survey-specific information (i.e. for each observation). This file is the raw data that were later manipulated to yield the sum total of monarchs observed at each site during a given survey (i.e. column SumofMonarchCount).

YearEffects_OH96to11.csv - Each row of this datasheet is a year of the study period (indicated in column 1). The remaining columns are: 1) accumulated GDD during spring in weeks 4-9 (second column); 2) average PDSI during weeks 4-9; and 3) total average spring precipitation in Texas.

weeks_OH96to11.csv - This file was used in data manipulation to note which sites were surveyed each week in each year.

Code

GEB 2016_Git code_SaundersSP.R - R code to manipulate data and fit the models described in the main text of the published paper, including evaluation of goodness of fit and creation of whiskerplots.

saunders_etal_2016_geb's People

Contributors

cbahlai avatar farrmt avatar saund123 avatar

Stargazers

 avatar

Watchers

 avatar  avatar  avatar  avatar

Forkers

farrmt

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.