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biapol-utilities

Collection of utility functions from the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence "Physics of Life", TU Dresden, Dresden, Germany

bioimageanalysisnotebooks

blog

Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.

bqplot

Plotting library for IPython/Jupyter notebooks

cell_electrochemical_simulator

deep-learning-omero-scripts

This repository hosts OMERO scripts for running some deep-learning pre-trained models for images in an OMERO server with a GPU.

defragmentation_ts2_eosc-life_2023

"Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow-based image analysis and new integrated methods for cloud computing applied to life sciences.

devbio-napari

flim_analysis

flood-napari

gets_app

gets_app_binder

gpu_accelerated_image_processing_on_cloud_neubias_defragmentation_ts2_2023

Material for the NEUBIAS Defragmentation Training School 2 day 2 workshop section entitled: Parallelization and heterogeneous computing: from pure CPU to GPU-accelerated image processing.

hazelnut_flim_z_stack_data

A repository to host a 3D FLIM z-stack used as sample data by napari-flim-phasor-plotter plugin

hubot

A customizable life embetterment robot.

i2k2022-napari-workshop

ia898

metroid

Computational tool to filter subcellular transmembrane potential signals from noisy single cell fluorescence videos

nap-plot-tools

A NAPari PLOTter TOOLbar and tools for additional functionalities.

napari

napari: a fast, interactive, multi-dimensional image viewer for python

napari-clusters-plotter-1

napari-flim-phasor-plotter

napari-introduction-4-image-analysis-and-data-processing-in-super-resolution-microscopy-2023

A repository containing napari introduction materials for the Image Analysis and Data Processing (not only) in Super-Resolution Microscopy 2023.

napari-matplotlib

napari-metroid

This napari plugin creates several regions of interest of similar area over cells in a fluorescence video (2D+time). It then gets ROIs means over time and performs signal denoising: fixes photobleaching and separates signal from noise by means of blind source separation (with or without wavelet filtering).

napari-mouse-controls

Control zoom, slicing and contrast windowing with mouse and touch screen

napari-phasors

napari-plot-profile

napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

napari-signal-selector