This napari plugin creates several regions of interest of similar area over cells in a fluorescence video (2D+time). It then gets ROIs means over time and performs signal denoising: fixes photobleaching and separates signal from noise by means of blind source separation (with or without wavelet filtering).
Currently, processed data is not saved, just displayed.
A widget in which the user can specify a directory could be provided in the main interface, so that the user can save the current processed signals and layers.
When graphics are displayed, if the user runs over images, a running dot could be added to the graphics according to the current frame being displayed.
Hi, I was trying to use the plugin and dragged and dropped and XYZ image to be treated as an XYT image with its label image, however I could not get it to recoganize the label image, the dropdown menu of the label image field is frozen. I am using the vollseg-napari sample data of embryo cell 3D for this one.Could it be that it reads the axis of the image as Z causing this? In Napari I can not change the image axes to fake it as T so I could not go forward.
Right now tests are failing. They are practically the default code from cookiecutter.
Proper tests need to be written not only to show that things are working, but also to reflect high code coverage.