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nn's Issues

preproc_char build_data is too slow for repeated index lookup

In dsets/preproc/preproc_char.py, the build_data is extremely slow since the character index is lookup for multiple times.

          chars = ['<null>'] * (CONTEXT - 1) + ['<s>'] + list(line) + ['</s>']
                # Begin right after start symbol, stop at end symbol inclusive
                for k in range(CONTEXT, len(chars)):
                    c_inds = [char_inds[c] for c in chars[k-CONTEXT:k+1]]

It is possible to speed up by eliminating redundant computations.

    chars_prefix = ['<null>'] * (context_size - 1) + ['<s>']
    chars_prefix = [char_inds[c] for c in chars_prefix]
    chars_suffix = [char_inds['</s>']]
    chars_prefix_array = np.array(chars_prefix)
    chars_suffix_array = np.array(chars_suffix)
    for f in data_files:
        path = pjoin(parent_path, f)
        print 'Processing %s' % path
        with open(path, 'r') as fin:
            for line in fin:
                ## Only for brown corpus
                # line = preproc_line(line)
                if not line:
                    continue
                chars = list(line)
                chars = [char_inds[c] for c in chars]
                # Begin right after start symbol, stop at end symbol inclusive
                c_inds_all = np.concatenate((chars_prefix_array, np.array(chars),
                    chars_suffix_array))
                # c_inds_all = np.array(chars_prefix + chars + chars_suffix)
                for k in range(context_size, c_inds_all.shape[0]):
                    c_inds = c_inds_all[k - context_size : k + 1]
                    if data_ind < num_train:
                        train_data[:, data_ind] = c_inds
                    elif data_ind < num_train + num_dev:
                        dev_data[:, data_ind - num_train] = c_inds
                    else:
                        test_data[:, data_ind - num_train - num_dev] = c_inds
                    data_ind += 1

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