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philosopher

A complete toolkit for shotgun proteomics data analysis

phyhorminteractome

PhyHormInteractome

practical_python_programming

北邮《Python编程与实践》课程资料

progulons

R scripts and KNIME workflows associated with our "Progulon" manuscript

prosit

Prosit offers high quality MS2 predicted spectra for any organism and protease as well as iRT prediction. When using Prosit is helpful for your research, please cite "Gessulat, Schmidt et al. 2019" DOI 10.1038/s41592-019-0426-7

proteingraphml

Protein Graph in Python for MetaPath-ML and more.

proteomeexpert

proteomehd

R scripts and data related to the manuscript "Co-regulation map of the human proteome enables identification of protein functions" by Kustatscher et al (https://www.nature.com/articles/s41587-019-0298-5)

proteomesoflife

python based queries for the proteomesoflife neo4j network database

ptmage

Calculates the age of a PTM using ancestral reconstruction (from Romain Studer)

ptm_hotspots

Estimate PTM hotspots in protein sequence alignments

pyquilts

Rebuilding QUILTS in Python.

python-knowledge-handbook

Python Knowledge Handbook by Python数据之道， website： http://liyangbit.com/

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

pytorch-deep-learning

Deep Learning (with PyTorch)

pytorchdocs

PyTorch 官方中文教程包含 60 分钟快速入门教程，强化教程，计算机视觉，自然语言处理，生成对抗网络，强化学习。欢迎 Star，Fork！

reproducibility-workflow

A short and to-the-point summary of a reproducible data science workflow

rtsne

R wrapper for Van der Maaten's Barnes-Hut implementation of t-Distributed Stochastic Neighbor Embedding

sccaps

An interpretable deep-learning architecture of capsule networks for identifying cellular-type gene expression programs from single-cell RNA-seq data

scientific-python-lectures

Lectures on scientific computing with python, as IPython notebooks.

scope2

scpcompanion

SCPCompanion for single cell proteomic analysis by mass spectrometry

scpcompanionsource

Source Code for SCP Companion

scriboseq_manuscript

serummetabolomepredictions

singlecellproteogenomics

Cell cycle analysis of single-cell proteomic and transcriptomic data for the FUCCI cell model

sirius-libs

sirius-libs - Metabolomics mass spectrometry framework for molecular formula identification of small molecules written in Java

sklearn-doc-zh

:book: [译] scikit-learn（sklearn） 中文文档

sp20

Public facing repo for DS-100 spring 2020

tabula-muris-senis

Tabula Muris Senis