akshayparopkari / rnaseq Goto Github PK

Is your feature request related to a problem? Please describe.

No. This is an enhancement request by @priyankasbapat

Describe the solution you'd like

Create support for UpSet plot R script in pipeline.sh

Describe alternatives you've considered

Alternatively, using a Venn diagram for comparing four or more data categories

Additional context

NA

Is your feature request related to a problem? Please describe.

No. This is an enhancement for DESEq2 downstream analysis.

Describe the solution you'd like

Use Candida albicans Assembly 21 information to add gene names and gene descriptions after padj column, on the right.

Describe alternatives you've considered

To use Vlookup with a master gene description file until this feature is implemented.

Additional context

This makes it easier to understand the DESEq2 results. Who remembers gene functions based on just ORF numbers?

Describe the bug

SLURM Job_id=1439415 Name=/home/pbapat/rnaseq/TF141indark Failed, Run time 00:02:40, FAILED, ExitCode 127

To Reproduce
Problem is I get all the output files so according to me, the run is successful. Just that the SLURM emails report it as this above error.
I am not sure what steps to write to reproduce this error. This has happened for 3-4 TF files, not all.