Ani's Projects
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
Course 18.S191 at MIT, Spring 2021 - Introduction to computational thinking with Julia:
mapping-free variation detection from DNA-seq data of matched samples
Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
📊 Data Visualization Techniques course for DS studies in Winter 2020/21
Links and meterials for the 2022 ASMS machine learning short course.
Clustering the NCBI nr database with mmseq2 (90% length, 90% identity). Inspired by the NCBI's experimental ClusteredNR database.
Notebooks to accompany my ASMS poster on Depthcharge
repo for constructing a 2024 presidential election forecast
Short JavaScript code snippets for all your development needs
AA_stat tool is for searching uncovering the unexpected modifications of amino acid residues in the protein sequences, as well as possible artifacts of data acquisition or processing, in the results of proteome analyses.
Press the 'f' and 'd' keys randomly. It's easy. Just use your "free will."
Language models for drug discovery using torchrl
:octocat: Static checker for GitHub Actions workflow files
A variation on a standard Decision Tree such as that in sklearn, where nodes may be based on an aggregation of multiple splits.
Toolkit for analyzing genetics data from admixed populations
Code repository for single-cell atlas of Alzheimer's disease progression across brain regions
Advanced R: a book
A Comprehensive Benchmark to Evaluate LLMs as Agents
Use AI to translate code from one language to another.
Roadmap to becoming an Artificial Intelligence Expert in 2022
The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑🔬
1000+ ready code templates to kickstart your next AI experiment
aiconfig -- config-driven, source control friendly AI application development
Aim — an easy-to-use and performant open-source experiment tracker.
aim-mlflow integration
ARIMA forecasts on the AirPassengers dataset built in Python and Tableau