Ani's Projects
a customizable protein feature visualization tool
Shiny app for proteomics data analysis
Linux Pressure Stall Information by Example
Reactivated PSI-MOD ontology for molecular mass modifications
A reimplementation of a classical PSMC method in python for educational purposes
A tool for summarizing open search results
Automatically exported from code.google.com/p/public-html-ani
Automatically exported from code.google.com/p/publichtml
Use gpt to summarize abstracts for a pubmed query
An efficient index for the colored, compacted, de Bruijn graph
Python tools for proteogenomics analysis toolkit
Circular visualization in Python (Circos Plot, Chord Diagram)
Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media
PyDEC: A Python Library for Discretizations of Exterior Calculus for simplicial complexes of any dimension embedded or not and for cubical complexes of any dimension. Implements discrete exterior derivative as coboundary, a Delaunay Hodge star operator and lowest order Whitney forms.
An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Institute of Biochemistry.
Gene ontology (GO) semantic similarity library for Python
A Python Library for Health Predictive Models
Python code for "Machine learning: a probabilistic perspective" (2nd edition)
PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.
Python tool for the discovery of similar 3D structural motifs across protein structures.
Smooth-quantile Normalization Adaptation for Inference of co-expression Links
Comparative analysis of pairwise interactions in multivariate time series.
High-Performance Symbolic Regression in Python and Julia
Python library for attractor identification and control in Boolean networks
All Algorithms implemented in Python
Second edition of Springer Book Python for Probability, Statistics, and Machine Learning
The "Python Machine Learning (3rd edition)" book code repository
Software used for generating embeddings from large-scale graph-structured data.
PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)
QCloud2 pipeline