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Ani's Projects

protter icon protter

a customizable protein feature visualization tool

psi-mod-cv icon psi-mod-cv

Reactivated PSI-MOD ontology for molecular mass modifications

psmc-python icon psmc-python

A reimplementation of a classical PSMC method in python for educational purposes

publichtml icon publichtml

Automatically exported from code.google.com/p/publichtml

pubmed-gpt icon pubmed-gpt

Use gpt to summarize abstracts for a pubmed query

pufferfish icon pufferfish

An efficient index for the colored, compacted, de Bruijn graph

py-pgatk icon py-pgatk

Python tools for proteogenomics analysis toolkit

pycirclize icon pycirclize

Circular visualization in Python (Circos Plot, Chord Diagram)

pydata-book icon pydata-book

Materials and IPython notebooks for "Python for Data Analysis" by Wes McKinney, published by O'Reilly Media

pydec icon pydec

PyDEC: A Python Library for Discretizations of Exterior Calculus for simplicial complexes of any dimension embedded or not and for cubical complexes of any dimension. Implements discrete exterior derivative as coboundary, a Delaunay Hodge star operator and lowest order Whitney forms.

pydiaid icon pydiaid

An open-source Python package for dia-PASEF methods with Automated Isolation Design (py_diAID) from the Mann Labs at the Max Planck Institute of Biochemistry.

pygosemsim icon pygosemsim

Gene ontology (GO) semantic similarity library for Python

pyhealth icon pyhealth

A Python Library for Health Predictive Models

pyprobml icon pyprobml

Python code for "Machine learning: a probabilistic perspective" (2nd edition)

pyrate icon pyrate

PyRate is a program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework.

pyscomotif icon pyscomotif

Python tool for the discovery of similar 3D structural motifs across protein structures.

pysnail icon pysnail

Smooth-quantile Normalization Adaptation for Inference of co-expression Links

pyspi icon pyspi

Comparative analysis of pairwise interactions in multivariate time series.

pysr icon pysr

High-Performance Symbolic Regression in Python and Julia

pystablemotifs icon pystablemotifs

Python library for attractor identification and control in Boolean networks

python icon python

All Algorithms implemented in Python

pytorch-biggraph icon pytorch-biggraph

Software used for generating embeddings from large-scale graph-structured data.

pywgcna icon pywgcna

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

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