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View Code? Open in Web Editor NEWA command line tool for identifying conserved lysine modification sites
Home Page: https://flams.kasgel.fi/
A command line tool for identifying conserved lysine modification sites
Home Page: https://flams.kasgel.fi/
If user gives an Uniprot ID instead of a FASTA file, this method is not run.
The user input validation should also be run when user input is an Uniprot ID.
Those files are big and downloading them takes a lot of time. If generating db fails for whatever reason (eg. user didn't install blast) it doesn't make sense to download them again on retry.
NcbiblastpCommandLine
doesn't put the path to db in double quotes, so the command is executed as follows: blastp -db /Users/ak/Library/Application Support/flams/acetylation-1.0
. This naturally returns error as the space character is not escaped.
This shouldn't affect Linux users, but on Mac the directory for storing app data is Application Support
.
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