Topic: bioinformatics Goto Github
Some thing interesting about bioinformatics
Some thing interesting about bioinformatics
bioinformatics,Protein Graph Library
User: a-r-j
Home Page: https://graphein.ai/
bioinformatics,A full spaCy pipeline and models for scientific/biomedical documents.
Organization: allenai
Home Page: https://allenai.github.io/scispacy/
bioinformatics,Python package for graph neural networks in chemistry and biology
Organization: awslabs
bioinformatics,ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Organization: bigdatagenomics
bioinformatics,Conda recipes for the bioconda channel.
Organization: bioconda
Home Page: https://bioconda.github.io
bioinformatics,Bioinformatics containers
Organization: biocontainers
Home Page: http://biocontainers.pro
bioinformatics,Working with molecular structures in pandas DataFrames
Organization: biopandas
Home Page: https://BioPandas.github.io/biopandas/
bioinformatics,Official git repository for Biopython (originally converted from CVS)
Organization: biopython
Home Page: http://biopython.org/
bioinformatics,Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
Organization: broadinstitute
Home Page: http://cromwell.readthedocs.io/
bioinformatics,Official code repository for GATK versions 4 and up
Organization: broadinstitute
Home Page: https://software.broadinstitute.org/gatk
bioinformatics,The next version of bwa-mem
Organization: bwa-mem2
bioinformatics,🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
Organization: combine-lab
Home Page: https://combine-lab.github.io/salmon
bioinformatics,Unix, R and python tools for genomics and data science
User: crazyhottommy
bioinformatics,A curated list of awesome Bioinformatics libraries and software.
User: danielecook
bioinformatics,List of Computer Science courses with video lectures.
User: developer-y
bioinformatics,In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more
Organization: dib-lab
Home Page: http://khmer.readthedocs.io/
bioinformatics,Data intensive science for everyone.
Organization: galaxyproject
Home Page: https://galaxyproject.org
bioinformatics,DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Organization: google
bioinformatics,Python and C++ code for reading and writing genomics data.
Organization: google
bioinformatics,A curated list of Cheminformatics libraries and software.
User: hsiaoyi0504
bioinformatics,Scripts to download genomes from the NCBI FTP servers
User: kblin
bioinformatics,A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinformatics)
User: kexinhuang12345
Home Page: https://doi.org/10.1093/bioinformatics/btaa1005
bioinformatics,Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
User: lh3
bioinformatics,A versatile pairwise aligner for genomic and spliced nucleotide sequences
User: lh3
Home Page: https://lh3.github.io/minimap2
bioinformatics,Toolkit for processing sequences in FASTA/Q formats
User: lh3
bioinformatics,Pytorch Repo for DeepGCNs (ICCV'2019 Oral, TPAMI'2021), DeeperGCN (arXiv'2020) and GNN1000(ICML'2021): https://www.deepgcns.org
User: lightaime
bioinformatics,A comprehensive tutorial about GWAS and PRS
User: mareesat
bioinformatics,Therapeutics Commons (TDC-2): Multimodal Foundation for Therapeutic Science
Organization: mims-harvard
Home Page: https://tdcommons.ai
bioinformatics,Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
User: moshi4
Home Page: https://moshi4.github.io/pyCirclize/
bioinformatics,Aggregate results from bioinformatics analyses across many samples into a single report.
Organization: multiqc
Home Page: http://multiqc.info
bioinformatics,A DSL for data-driven computational pipelines
Organization: nextflow-io
Home Page: http://nextflow.io
bioinformatics,Workflow Description Language - Specification and Implementations
Organization: openwdl
Home Page: https://www.openwdl.org/
bioinformatics,Data Apps & Dashboards for Python. No JavaScript Required.
Organization: plotly
Home Page: https://plotly.com/dash
bioinformatics,A plotly.js React component from Plotly 📈
Organization: plotly
bioinformatics,scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.
Organization: scikit-bio
Home Page: https://scikit.bio
bioinformatics,Robust, flexible and resource-efficient pipelines using Go and the commandline
Organization: scipipe
Home Page: https://scipipe.org
bioinformatics,Single-cell analysis in Python. Scales to >1M cells.
Organization: scverse
Home Page: https://scanpy.readthedocs.io
bioinformatics,Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
User: seandavi
bioinformatics,A high-performance, Pythonic language for bioinformatics
Organization: seq-lang
Home Page: https://seq-lang.org
bioinformatics,A cross-platform, efficient and practical CSV/TSV toolkit in Golang
User: shenwei356
Home Page: http://bioinf.shenwei.me/csvtk
bioinformatics,A cross-platform command-line tool for executing jobs in parallel
User: shenwei356
Home Page: https://github.com/shenwei356/rush
bioinformatics,A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
User: shenwei356
Home Page: https://bioinf.shenwei.me/seqkit
bioinformatics,MMseqs2: ultra fast and sensitive search and clustering suite
Organization: soedinglab
Home Page: https://mmseqs.com
bioinformatics,Making Protein folding accessible to all!
User: sokrypton
bioinformatics,Foldseek enables fast and sensitive comparisons of large structure sets.
Organization: steineggerlab
Home Page: https://foldseek.com
bioinformatics,Python library to facilitate genome assembly, annotation, and comparative genomics
User: tanghaibao
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We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.