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rosalind-5

Solutions of computational tasks from http://rosalind.info/about/ relates to bioinformatics.

rstuff

sundry little R projects

r_code

Materials to support learning with my YouTube channel, https://www.youtube.com/c/EquitableEquations.

sad

scasat

Scasat is a single cell ATAC-seq preprocessing and analysis pipeline

scatac-benchmarking

Benchmarking computational single cell ATAC-seq methods

scatacseq-analysis-notes

my notes for scATACseq analysis

scbatchpaper

Code used for the single-cell RNA-Seq batch effects paper

scdeepsort

Reference-free Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network

scdney

Single cell data integrative analysis

scenicprotocol

A scalable SCENIC workflow for single-cell gene regulatory network analysis

scfba

scgen

Single cell perturbation prediction

sci-fate_analysis

Downstream analysis script for sci-fate (TF-gene linkage analysis / cell linkage analysis)

sci-hub-liberator

interface to Sci-Hub (to avoid firewall blocking)

scikit-learn-mooc

scikit-learn-mooc

scmap-paper-figures

Scripts to recreate figures from the scmap paper

scnn

Survival Convolutional Neural Networks

scrna-seq-pipelines

Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"

scrna-seq_notes

A list of scRNA-seq analysis tools

scrna2019

supporting code for the multinomial single cell RNA-Seq paper

scrnagan

Training Generative Adversarial Network models for scRNA-seq datasets

scrnaseq-analysis-notes

my scRNAseq analysis notes

scrnaseq-wgan-gp

Wasserstein Generative Adversarial Network for analysing scRNAseq data

scrnaseq_benchmark

Bench-marking classification tools for scRNA-seq data

sctcwhatateam

sctyper

scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data

segregated-dendrite-deep-learning

Deep learning in a spiking neural network using segregated dendrites.

self-assembling-manifold

The Self-Assembling-Manifold (SAM) algorithm.

seximm