Comments (2)
Thanks for the report @Piergiorge !
This new commit should fix the problem. Previously phylostratr
required you add an staxid
column to your BLAST files. This was not really necessary, since phylostratr
already knows the taxonomy IDs and should be able to generate the column for you. Now it can.
I've also added a bunch of new tests and runtime assertions, so you should get more intuitive error messages if the BLAST files are not formatted the way phylostratr
wants them.
If this problem isn't fixed, feel free to reopen the issue.
Hope this helps!
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@Piergiorge btw, congrats on your first GitHub issue report! Just a little style note: you can paste syntax-highlighted code blocks like this
``` R
foo <- function(x) x
```
which will render nicely as so:
foo <- function(x) x
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