Comments (1)
ArnaudBelcour
commented on July 23, 2024
After thinking about it, it seems not possible as the pathway prediction score is written in the ptools-init file. So only one pathway prediction score can be written at a time during a run of mpwt.
One way to do this could be to launch a bunch of Pathway Tools processes according to a pathway prediction score, wait there end and then launch another bunch of processes with different pathway prediction score. This could be possible but could need more work so I think it will not made it into the 0.7.0.
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Related Issues (20)
- Add __version__ to mpwt. HOT 1
- Refactor how paths are handled. HOT 1
- Error when trying to create dat files without input folder. HOT 2
- mpwt move output files should be more flexible. HOT 1
- Issue with encoding of flat_files_creation.log. HOT 1
- Issue with Pathway Tools 25.0 when checking log. HOT 1
- Make each run of Pathway Tools independent. HOT 2
- String not Boolean and path incorrect HOT 2
- Issue with Pathway Tools 25.5 when checking log HOT 2
- Issue mpwt with the --hf option HOT 1
- Add an option to use -complex-inference (Pathway-Tools 26.0). HOT 1
- Use -dump-flat-files-biopax to create flat files (Pathway-Tools 26.0). HOT 1
- Pathway-tools 26.0 handles gbff and gff without input files.
- bypass the genetic-elements.dat and organisms.dat creation HOT 4
- issue when there is an extra file in the input folder HOT 1
- Issue mpwt delete and ptools cache ? HOT 3
- Pathway Tools is not in the Path, mpwt can not work without it. HOT 23
- Error when launching mpwt HOT 2
- When I use pathway tools to build models, this problem always appears: Fatal error: The search using the name of your rganism ("Caloramator Bacteria, Firmicutes, Clostridia, Clostridiales, Caloramator." strain=NIL) failed to find any Taxon class for your organism or returned ambiguous results. HOT 2
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