Comments (2)
Ok, this is because my ptools has problems, sorry. The result of the process does not contain "Pathway Tools version".
Maybe, the error message could be clearer :-).
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Hi @lcottret,
Indeed, the error message should be better. I have made a better error message in version 0.8.2.
Thank you for the issue and the feedback.
from mpwt.
Related Issues (20)
- Error when trying to create dat files without input folder. HOT 2
- mpwt move output files should be more flexible. HOT 1
- Issue with encoding of flat_files_creation.log. HOT 1
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- Make each run of Pathway Tools independent. HOT 2
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- Add an option to use -complex-inference (Pathway-Tools 26.0). HOT 1
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- bypass the genetic-elements.dat and organisms.dat creation HOT 4
- issue when there is an extra file in the input folder HOT 1
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- Pathway Tools is not in the Path, mpwt can not work without it. HOT 23
- When I use pathway tools to build models, this problem always appears: Fatal error: The search using the name of your rganism ("Caloramator Bacteria, Firmicutes, Clostridia, Clostridiales, Caloramator." strain=NIL) failed to find any Taxon class for your organism or returned ambiguous results. HOT 2
- I have created dozens of genome files and this situation has occurred. How can I solve it. HOT 3
- /mpwt/pwt_wrapper.py: ['Error', 'fatal error', 'No protein-coding genes with sequence data found.', 'Cannot continue.'] HOT 3
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