Comments (2)
Hi @ChenCongZ,
There is an issue in your genbank files that leads to this error. In the line below ORGANISM
(containing the taxonomy associated with your organism), you have a string with taxa names separated by ,
whereas it should be ;
.
Your input that leads to the error (for file GCA_002400085.gbk
):
SOURCE Caloramator
ORGANISM Caloramator
Bacteria, Firmicutes, Clostridia, Clostridiales, Caloramator.
The correct input:
SOURCE Caloramator
ORGANISM Caloramator
Bacteria; Firmicutes; Clostridia; Clostridiales; Caloramator.
Also as you have taxon_id.tsv
, you could use the --taxon-id
option to directly use the taxon ID contains in these files, that should avoid this issue. But before you should remove the organism-params.dat
files in your folder as they are not correct.
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Hi @ArnaudBelcour,
Thank you for your help. Solve this problem and close it.
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