bodenmillergroup Goto Github PK
Type: Organization
Type: Organization
HistoSlider project
ilastik-shell, applets, and workflows to string them together.
Overview repository for the Multiplexed Image
Central repository for the Multiplexed Tissue Imaging Workshop 2023.
R based workflow for multiplexed imaging data
ExperimentHub collection of imaging mass cytometry datasets
CellProfiler plugins for multiplexed image analysis
An R package for handling and analysing imaging mass cytometry data
A pixel classification based multiplexed image segmentation pipeline
The repository for the Snakemake implementation of the ImcSegmentationPipeline
Python package for processing segmented multi-channel images
Tools to handle IMC data
Overview repository on IMC data analysis
UNDER CONSTRUCTION: Image Mass Cytometry analysis pipeline
IMD file parser library
IMMUcan ROI selection using napping and napari-roi
Repository for teaching and instruction purposes
Command line tool to convert MCD files to Zarr
MCD file parser library
check static webpage here:
Code and scripts used to perform spatial sampling analysis as described in "Optimizing multiplexed imaging experimental design through tissue spatial segregation estimation"
Analyzing the performance of the ImcSegmentationPipeline
Covid skin rash analysis
Carl Zeiss Image (.czi) file support for napari
Complex bio-image file format support for napari
Imaging Mass Cytometry (IMC) file type support for napari
A napari plugin to create spatial graphs from labels layers
A napari plugin to read and write spatial graphs using networkx
Select regions of interest (ROIs) using napari
Control point mapping and coordinate transformation using napari
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.