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Registration of animal MR brain data to a standard (published) atlas. The pipeline works with invivo or exvivo (skull-stripped) MR-data for the following species: mouse, rat, Etruscan shrew and cat. *OS: Windows, MAC, Linux. *Matlab: R2016a or later.

License: Other

MATLAB 88.33% Batchfile 0.01% HTML 0.51% M 0.14% Java 0.03% C 5.77% AutoHotkey 0.01% Makefile 0.05% Shell 0.02% Roff 0.25% CSS 0.01% Smarty 0.01% TeX 4.78% C++ 0.09%
atlas registration mri elastix spm

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antx2's Issues

Import Bruker data

I have a question. In raw bruker data t1 intensity scale is different from import bruker data in antx2.
Example my date scale 500:20000 (raw) but import bruker data in antx2 is 0:50 intensity value.
what's the problem? or what's the algorithm to change intensity scale?
how can i preserve my data intensity?

"ANOpcol.nii" file request

Hi There,

Thx for the excilent toolbox for the mouse MRI data analysis. Could you also provide the "ANOpcol.nii" file for "mouse_Allen2017HikishimaLR"? Some of the tutorial used this file, but it is not included in the Atlas files shared at google drive. Thanks a lot!

Bests,

John

some problem when CREATE a PROJECT

when I create a project used ANT gui,some errors have occurred
what I used is matlab 2021a
image

ant
+-+-+-+-+-+
|A|N|T|x|2|
+-+-+-+-+-+
ANTx2-v:git is not installed
Download it at http://git-scm.com/download
错误使用 strfind
搜索词 必须为文本或模式标量。

出错 contains (第 36 行)
tf = ~cellfun(@isempty, strfind(s, pattern));

出错 matlab.ui.internal.prepareFigureFor

出错 uistack (第 69 行)
matlab.ui.internal.prepareFigureFor(morphFig, mfilename('fullpath'))

出错 paramgui (第 523 行)
uistack(ax,'bottom');

出错 antconfig (第 203 行)
[m z a params]=paramgui(p2,'uiwait',1,'close',1,'editorpos',[.03 0 1 1],'figpos',figpos,...

出错 xnewproject (第 37 行)
[m z]=antconfig(1,'parameter','default','savecb','no');

出错 ant>menubarCB (第 2370 行)
xnewproject;

错误使用 ant>menu_getTable (第 1727 行)
计算 Menu Callback 时出错。

错误使用 weboptions (第 378 行)
对于此运算,数组的大小不兼容。

出错 matlab.internal.doc.updateConnectorDocroot (第 3 行)
options = weboptions('RequestMethod','post', ...

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