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Registration of animal MR brain data to a standard (published) atlas. The pipeline works with invivo or exvivo (skull-stripped) MR-data for the following species: mouse, rat, Etruscan shrew and cat. *OS: Windows, MAC, Linux. *Matlab: R2016a or later.

License: Other

MATLAB 88.38% Batchfile 0.01% HTML 0.51% M 0.14% Java 0.03% C 5.75% AutoHotkey 0.01% Makefile 0.05% Shell 0.02% Roff 0.24% CSS 0.01% Smarty 0.01% TeX 4.76% C++ 0.09%
atlas registration mri elastix spm

antx2's Issues

"ANOpcol.nii" file request

Hi There,

Thx for the excilent toolbox for the mouse MRI data analysis. Could you also provide the "ANOpcol.nii" file for "mouse_Allen2017HikishimaLR"? Some of the tutorial used this file, but it is not included in the Atlas files shared at google drive. Thanks a lot!

Bests,

John

some problem when CREATE a PROJECT

when I create a project used ANT gui,some errors have occurred
what I used is matlab 2021a
image

ant
+-+-+-+-+-+
|A|N|T|x|2|
+-+-+-+-+-+
ANTx2-v:git is not installed
Download it at http://git-scm.com/download
错误使用 strfind
搜索词 必须为文本或模式标量。

出错 contains (第 36 行)
tf = ~cellfun(@isempty, strfind(s, pattern));

出错 matlab.ui.internal.prepareFigureFor

出错 uistack (第 69 行)
matlab.ui.internal.prepareFigureFor(morphFig, mfilename('fullpath'))

出错 paramgui (第 523 行)
uistack(ax,'bottom');

出错 antconfig (第 203 行)
[m z a params]=paramgui(p2,'uiwait',1,'close',1,'editorpos',[.03 0 1 1],'figpos',figpos,...

出错 xnewproject (第 37 行)
[m z]=antconfig(1,'parameter','default','savecb','no');

出错 ant>menubarCB (第 2370 行)
xnewproject;

错误使用 ant>menu_getTable (第 1727 行)
计算 Menu Callback 时出错。

错误使用 weboptions (第 378 行)
对于此运算,数组的大小不兼容。

出错 matlab.internal.doc.updateConnectorDocroot (第 3 行)
options = weboptions('RequestMethod','post', ...

相关文档

Import Bruker data

I have a question. In raw bruker data t1 intensity scale is different from import bruker data in antx2.
Example my date scale 500:20000 (raw) but import bruker data in antx2 is 0:50 intensity value.
what's the problem? or what's the algorithm to change intensity scale?
how can i preserve my data intensity?

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