christacaggiano Goto Github PK

academic-webpage

jekyll template for simple academic webpage

algorithms

notes for UCSF BMI 203, winter quarter 2018

als-lasso

analysis-of-variance-

Performs an ANOVA on large biological data sets

applied_statistics_reading_list

Applied statistics reading list for Zaitlen lab

awesome-deepbio

A curated list of awesome deep learning applications in the field of computational biology

awesome-ehr-deeplearning

Curated list of awesome papers for electronic health records(EHR) mining, machine learning, and deep learning.

bachelor_data

Scraping data from the ABC shows The Bachelor and The Bachelorette.

biological-physics-

Uses statistical mechanics to calculate the probability of a transcription factor being bound to a gene as a function of its binding affinity

brandeis-art-science-blog

Blog created for Brandeis Art Science Initiative

bsbolt

BiSulfite Bolt - A Bisulfite Sequencing Alignment and Processing Tool

buds-ucsf-2017

PUBS 2017 @ UCSF

c

C code written for Brandeis course Data Structures and Algorithms

caravaggio

playing around with what a NN can learn about a caravaggio painting

cards-against-science

Scientists need to have some fun every now and then; we hope this game is fun (if not, you might just not have any humor).

causal-inference-reading-list

Some papers I've come across on causal inference

caviar

Bioinformatic software to identify causal variants in GWAS and GWAS/eQTL studies.

celfie

cfDNA cell type of origin estimation

cell-free-dna-reading-list

Important papers relating to the biology of cell free DNA

cfdna-tims

Code for the analysis of tissue informative markers in cfDNA data

chalk

Chalk is a high quality, completely customizable, performant and 100% free Jekyll blog theme.

chilin

ChIP-seq DC and QC Pipeline

christacaggiano.github.io

my personal website

circle_rna

Circle RNA exploration

computational-science

Supplements to the Computational Science applied maths course at University College Dublin.

differential-methylation

code for calling DMRs in cfdna data

ecaviar-in-julia

GWAS-EQTL colocalization written in the Julia programming language

encode_wgbs

a SGE, python, implementation of the ENCODE consortium whole genome bisulfite sequencing pipeline.

exome_processing_pipeline

simple pipeline for processing exome sequencing data using BWA and GATK4

gatk_exome_seq