Comments (3)
Ah yes, there is a bug, in the sense that the form should allow you to update the name of the panel shown on the report , and this is not working at the moment (I'll fix).
What is not expected is that if you pick the name of another existing panel in scout it will show the coverage stats on that other panel. This is because chanjo2 is disconnected from scout and has no access to its panels/genes. Once you are on the report page you can only update genes used in the stats by modifying the gene list in that form.
Aha, I see! Yes, now when reading more carefully it makes sense "Gene panel name to display", not "Gene panel to display" 🙈 Thank you for clarifying!
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Aha, I see! Yes, now when reading more carefully it makes sense "Gene panel name to display", not "Gene panel to display" 🙈 Thank you for clarifying!
No worries, you found a bug and it's useful!
from chanjo2.
Ah yes, there is a bug, in the sense that the form should allow you to update the name of the panel shown on the report , and this is not working at the moment (I'll fix).
What is not expected is that if you pick the name of another existing panel in scout it will show the coverage stats on that other panel. This is because chanjo2 is disconnected from scout and has no access to its panels/genes. Once you are on the report page you can only update genes used in the stats by modifying the gene list in that form.
from chanjo2.
Related Issues (20)
- On report page, add one more field to specify a list of completeness cutoffs for the stats HOT 1
- Completeness cutoff on report has no memory of submitted form when page is refreshed
- Js errors on report page
- Lib import error while connecting to MySQL using MacOS HOT 1
- Failed to load API definition for Chanjo2 API HOT 7
- On report page, customize search to allow also HGNC symbols and Ensembl IDs
- Server timeout when loading exons HOT 13
- Trouble getting /report calls to the correct end point, round 2 HOT 4
- Modify report endpoints to only accept forms and not json data? HOT 6
- Detailed gene info in main report HOT 2
- Occasionally large differences in coverage for same gene region in same sample HOT 11
- Can't install mysqlclient on macOS
- Warnings by the black (lint) action
- Startup errors crashing in log statement HOT 17
- Address security alerts
- Improve performance of get_coverage_completeness.py HOT 5
- Minimal stats endpoint for delivery reports in scout HOT 3
- Clarify "Average coverage" HOT 2
- Handle errors for condensed stats endpoint
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