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peterpru avatar peterpru commented on July 29, 2024 1

This sounds great for the delivery report.

from chanjo2.

peterpru avatar peterpru commented on July 29, 2024 1

This is great, thanks! I will incorporate it into the raredisease delivery report.

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northwestwitch avatar northwestwitch commented on July 29, 2024

Hello again @peterpru, I've just merged the new feature and I'm going to create and deploy on cg-vm1 a new release of chanjo2 today.

Here's an example of the query you need to send from cg (you can also try it from the terminal):

curl -X 'POST' \
  'https://chanjo2-stage.scilifelab.se/coverage/d4/genes/summary' \
  -H 'accept: application/json' \
  -H 'Content-Type: application/json' \
  -d '{
  "build": "GRCh37",
  "samples": [
    {
      "name": "TestSample",
      "coverage_file_path": "/home/proj/stage/housekeeper-bundles/safeguinea/2023-06-26/ADM997A3_lanes_12_sorted_md.d4"
    }
  ],
  "hgnc_gene_ids": [
    2861, 3791, 6481, 7436, 30521
  ],
  "coverage_threshold": 10,
  "interval_type": "genes"
}'

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