Comments (1)
Same as #18 (comment)
from callings-nf.
Related Issues (20)
- picard.jar not found HOT 1
- Using Single end data HOT 5
- The genomeDir dir name is confusing
- GATK4 branch does not require separate Picard HOT 3
- suggest adding docker runOptions to nextflow.config HOT 1
- Error: Unable to access jarfile /scratch/oknjav001/transcriptomics/proteogenomics/variabtcalling/gatk/gatk3.7/GenomeAnalysisTK.jar HOT 1
- Reading single end reads HOT 4
- Whether do not generate star index if provide directly? HOT 1
- Process POST_PROCESS_VCF failes when order of chromosomes in result.DP8.vcf differs from that in the GRCm38/Annotation/Variation/Mus_musculus.vcf
- could not execute mkdir HOT 1
- mm39 variants / black list HOT 4
- The on-the-fly two-pass option could be used to avoid the genome regeneration step HOT 3
- will there be a nf of dna variant calling which need paired samples
- Could not build fai index genome.fa.fai
- denylisted genome file
- Documentation issue? HOT 2
- Process `ASE_KNOWNSNPS (SAMPLE123XYZ)` terminated with an error exit status (2) (More then one variant context at position: chr3:XXXXXXX) HOT 2
- Operator `phase` is deprecated
- ERROR: Input files reference and features have incompatible contigs
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