Compressed output if input is compressed about goalign HOT 6 CLOSED

Hello,

Thank you for your suggestion. I added the possibility to output gz and xz compressed files, if they have .gz or .xz extension.
For example:

goalign reformat phylip -i a.fasta -o a.phylip.gz

Should produce a gz compressed file.

I prefer the output compression to be independent of the input compression, allowing more flexibility.
I may create a new release in the coming days, but feel free to test it in the meantime.

from goalign.

Thank you @fredericlemoine. I will give it a go. A new release would be great. And, yes, I agree that giving the user the choice of compressing the output would be ideal.

from goalign.

Just FYI @fredericlemoine I am adding modules to nf-core for goalign.

from goalign.

Good to know, thanks. Is this this PR? nf-core/modules#1785 ?

from goalign.

Yes. That is the first one. I'll add one per sub-command. Once the first one is done, it should be trivial to add the others.

from goalign.

Great, thanks. Let me know if you need help at some point.
I close this issue.

from goalign.