Add options to allow partial bootstrap sampling. about goalign HOT 4 CLOSED

Hi Kun,

I am not sure that resampling with replacement 1Mb over 10Mb will give statistically robust supports (actually there is this partial bootstrap here).
Maybe a simple subsampling can solve your problem? (I just added this option: goalign sample sites --consecutive=false on the v0.3.3d release.
Let me know what you think.

Best,
Frederic

from goalign.

Hi Frederic,

I just want an alternative tool to realize Jackknife function in phylip-seqboot, not exactly sub-resampling with replacement, jackknife is useful when computation resources and time is limited, and it can avoid some potential problems of bootstrap.

Do you have any plan to add some options or functions to do jackknifle or parametric bootstrap?

Best,
Kun

from goalign.

Hi,

If you think it is useful, you can try to use the option --frac/-f of build seqboot/distboot just implemented in this pre-release.
If this answers your question, feel free to close the issue,

Best,
Frédéric

from goalign.

Hi,

Thank you very much, and I am now close it.

Best,
Kun

from goalign.