Comments (3)
Hi there, just wanted to thank both of you again for the awesome work.
I just wanted to check if there is any progress about reading other detector types (UV, Pump Pressure) out of Thermo Raw Files.
We recently had some bigger issues with Vanquish retention time shifts, clearly linked to the pump pressure.
Which could be nicely checked if the data would be accessible.
So keep up the great work 👍
Bernd
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This issue directly connects to #1, since our current code reads always from the detector type MS
. If we would like to support other detector types in the future details about those become necessary.
from rawrr.
Hi @BerndMaier, we unfortunately haven't worked on this issue yet. Currently, we are pushing to get rawrr
submitted to bioc (which turned out to be more complicated than expected). But I am still hoping that we will also support other detectors in the future. We also welcome help, since this is mainly work on the C# code. So all the protinf c# nerds out there this is your chance to contribute!!!
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Related Issues (20)
- Get information on gradient HOT 1
- Enhancement - Complete readIndex() function HOT 9
- Peak charges for MS1 spectras HOT 4
- Spectrum scan centroid mZ, intensity and noises values do not match HOT 2
- Error in Example: Length of "x" and "y" are not matching HOT 3
- Read noise value for profile mode mass spectra HOT 4
- Read_Spectrum - Sum Spectra
- unit should be minute / auc computation in seconds HOT 24
- validate_rawrrSpectrum 'StartTime' HOT 4
- "Error: line 1 did not have 9 elements" for readIndex() and readChromatogram() + "Error : No scan vector is provided"for readSpectrum HOT 9
- Problem executing readChromatogram inside Singularity container HOT 5
- Add a check if `input` file exists and is not empty
- Error in if (rvs != "No RAW file specified!") { : the condition has length > 1 HOT 16
- Switch to RawFileReader 5.0.93 HOT 2
- different total number of Spectra in msconvert, compomics/ThermoRawFileParser and thermofisherlsms/RawFileReader HOT 2
- Request for auc.rawrrChromatogram HOT 3
- profile mode in readSpectrum HOT 11
- speed up readIndex/readSpectrum by base::textConnection HOT 14
- rawrr::buildRawrrExe() fails HOT 6
- auc.rawrrChromatogram question
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