Florian Wuennemann's Projects
Open source code for AlphaFold.
āļø Personal webpage for Florian Wuennemann based on the Astrowind template
Repository for setting up Rshiny hub
Repository of air quality data from Awair devices
Simple bacterial assembly and annotation pipeline
Background subtraction for COMET platform
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
Conda recipes for the bioconda channel.
Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.
Repository containing gitpod configuration for creating and testing bioconda recipes.
A Python package using Gromov-Wasserstein distance to compare cell shapes
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
š Circular and Rectangular Manhattan Plot
Test repository for a Codiga team
Galaxy container for single cell RNA-Seq tertiary analysis tools
Bioinformatics containers
Deep count autoencoder for denoising scRNA-seq data
Run DeepCell Applications
R package for detecting doublets in single-cell RNA sequencing data
All Scripts and tools used to analyze Dropseq single cell data.
Scripts used for "Comparing transcriptional dynamics of the epithelial-mesenchymal transition"
Example of using MultiQC within a Streamlit app
Small shiny app to explore the output and QC parameters from MCMICRO runs.
A simple baseline for one-shot multi-object tracking