Spotchecking these YeastPathways models, and for Evidencethe source field for the CC t

Fixed! <a target="_blank" rel="noopener noreferrer" href="https://user-images.gith

<a target="_blank" rel="noopener noreferrer nofollow" href="https://user-images.github

The source field issue should be handled once <a clas

YeastPathways import: "source: null:pathway-name" instead of "source: SGD:pathway-name*" about pathways2go HOT 4 CLOSED

suzialeksander commented on July 29, 2024

YeastPathways import: "source: null:*pathway-name" instead of "source: SGD:*pathway-name*"

from pathways2go.

Comments (4)

suzialeksander commented on July 29, 2024 1

Fixed!

from pathways2go.

suzialeksander commented on July 29, 2024

from pathways2go.

dustine32 commented on July 29, 2024

The source field issue should be handled once #126 is solved.

from pathways2go.

dustine32 commented on July 29, 2024

Oh, I see now there's a conditional that sets source prefix depending on providedBy value and the case for SGD didn't match what we were currently supplying:

pathways2GO/exchange/src/main/java/org/geneontology/gocam/exchange/GoCAM.java

Line 209 in 63b853a

}else if(base_provider.equals("https://yeastcyc.org")) {

AFAIK this discrepancy was only occuring for rule-inferred edges. I'll fix it by changing the conditional value to https://yeastgenome.org.

from pathways2go.

YeastPathways import: "source: null:pathway-name" instead of "source: SGD:pathway-name*" about pathways2go HOT 4 CLOSED

Comments (4)

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