YeastPathways models have imaginary DB ref about pathways2go HOT 4 OPEN

@dustine32 the SGD_PWY: should now be a real thing, let me know if you need anything else on my end

from pathways2go.

Two proposed options from call with @kltm and @dustine32 :

1. Have SGD add these 220 pathways (names like LIPASYN-PWY-1 PWY-5703) to work in the yeastgenome.org search disambiguation (which is oddly in the dbxrefs.yaml under SGD_LOCUS):

  url_syntax: https://www.yeastgenome.org/search?q=[example_id]&is_quick=true
  example_id: SGD_PWY:LIPASYN-PWY-1
  example_url: https://www.yeastgenome.org/search?q=SGD_PWY:LIPASYN-PWY-1&is_quick=true

2. Add a new namespace in the dbxrefs.yaml likeSGD_PWY: . This would go to https://pathway.yeastgenome.org/ and end up at https://pathway.yeastgenome.org/YEAST/NEW-IMAGE?type=PATHWAY&object=YEAST-SALV-PYRMID-DNTP

from pathways2go.

SGD is opting for door no.2, changing dbxrefs.yaml. I'll put in a PR.

from pathways2go.

@suzialeksander Awesome, thank you! I'll update the code and get some new models into noctua-dev.

from pathways2go.