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vanaukenk avatar vanaukenk commented on September 24, 2024 1

See also: https://agr-jira.atlassian.net/browse/SCRUM-3157

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kltm avatar kltm commented on September 24, 2024

In discussion with @vanaukenk and @ukemi , @kltm will

  • merge code; put out to prod
  • update model URI
  • do a doc check (now geneontology/go-site#1929)
  • (if possible, enable HTTPS during this process as we are safely in AmiGO)

Otherwise, we'll take this as bugs and and fix as we find them as part of ongoing maintenance.

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kltm avatar kltm commented on September 24, 2024

I'm having a little trouble building the code on prod. Likely caused by an older node/npm; will be digging into it.

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kltm avatar kltm commented on September 24, 2024

After initially running into this error after a wipe and build

[13:22:04] 'compile_js_dev' errored after 35 ms
[13:22:04] TypeError: Cannot read property 'value' of undefined
    at /home/bbop/local/src/git/amigo/gulpfile.js:322:45
    at new Promise (<anonymous>)
    at _client_compile_task (/home/bbop/local/src/git/amigo/gulpfile.js:297:12)
    at /home/bbop/local/src/git/amigo/gulpfile.js:345:20
    at Function._.map._.collect (/home/bbop/local/src/git/amigo/node_modules/underscore/underscore.js:172:24)
    at compile_js_dev (/home/bbop/local/src/git/amigo/gulpfile.js:344:12)
    at bound (domain.js:301:14)
    at runBound (domain.js:314:12)
    at asyncRunner (/home/bbop/local/src/git/amigo/node_modules/async-done/index.js:55:18)
    at _combinedTickCallback (internal/process/next_tick.js:132:7)
[13:22:04] 'install' errored after 5.46 s

I was able to proceed with a second run of the command. All further wipe and build have not recreated this error, so there is some state I missed or the error is non-deterministic. Either way, pushing forward.

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kltm avatar kltm commented on September 24, 2024

I jumped the gun on putting this out to production: we will need to have the updated code in the merged GO API out first.

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tmushayahama avatar tmushayahama commented on September 24, 2024

@kltm just from top of my head, bbop gulp doesn't work for node more than 10

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kltm avatar kltm commented on September 24, 2024

Fortunately, it seems to be a non-deterministic issue. The patch-up that @pkalita-lbl did allows us to compile on some of the older versions, including production. The issues we have now are with me jumping the gun on the API, not that we've switched to HTTPS.

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kltm avatar kltm commented on September 24, 2024

http://model.geneontology.org/568b0f9600000284 should go to https://amigo.geneontology.org/amigo/model/568b0f9600000284

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kltm avatar kltm commented on September 24, 2024

This now seems to function as expected.

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