gersteinlab Goto Github PK
Name: Gerstein Lab
Type: Organization
Location: New Haven, CT
Name: Gerstein Lab
Type: Organization
Location: New Haven, CT
The package includes the AlleleDB pipeline developed in the Gerstein Lab at Yale. This pipeline was built and applied to perform a uniform identification of SNVs associated with allele-specific binding and expression in 382 individuals from the 1000 Genomes Project. Please see website for more detailed README.
ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the human genome.
Using sliding window to extract k-mers for annotation (specfically exons) in GTF format
Bayesian model to integrate two types of ChIP-seq controls for binding site detection
CBB752 SP2019 Course Website
Chromosome Painting Tool for visualizing signal track density heat-maps of ENTEx experiments.
Code to reproduce the analyses described in the manuscript, "Approaches for integrating heterogeneous RNA-seq data reveals cross-talk between microbes and genes in asthmatic patients"
A Deep-learning Framework for Condensing Enhancers and Refining Boundaries with Large-scale Functional Assays
The DNABERT model for ENTEx
ESPRNN: Epigenome-based Splicing Prediction using Recurrent Neural Network
Modelling tumor progression from a single VCF file
Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets
Predicting privacy risk of functional genomics data
A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality
A flexible framework to annotate and prioritize cancer somatic mutations.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
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We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.