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mollm

A Unified Language Model to Integrate Biomedical Text with 2D and 3D Molecular Representations

motiftools

TF Motif Variant Analysis

mrtadfinder

a method to identify TADs in Hi-C data

musevo

music

MUltiScale enrIchment Calling for ChIP-Seq Datasets

nb-fit

Negative binomial regression fitting code in C++. Adapted from R source code.

nimbus

orthoclust

papers.gersteinlab.org

pcawgadditivevariance

peakseq

Identifying and ranking peak regions in ChIP-Seq experiments

peoplepage

plight

Privacy Leakage through Inference across Genotypic HMM Trajectories

ppt

privaseq4

psychencode-dspn

#DSPN

psychencode_singlecell_integrative

Integrative Analyses across 388 human brain samples at single-cell resolution

public_documents

A Repository for Gerstein Lab public documents.

radar

RADAR source code

repic-copy

Copy of REliable PIcking by Consensus (REPIC)

retrodup

An integrated retroduplication caller based on 1) exon-exon junction and 2) discordant reads

rseqtools

A modular framework to analyze RNA-Seq data using compact and anonymized data summaries.

samchain

scan-atac-sim

SCAN-ATAC Sim is a single-cell ATAC-seq data simulator used to benchmark various single-cell ATAC-seq data analysis methods.

scf

shiny-dim-reduction

This project applies dimensionality reduction to tabular data and generates applications for visualizing the results.

siglasso

Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood

sshcp

Moving big files around the network

starrpeaker

STARRPeaker: STARR-seq peak caller

stress