guillawme / angdist Goto Github PK

@Guillawme

As I ran angdist, I see 'rot vs tilt' distribution.

Can I see psi distribution as well such as 'rot vs psi'?

Since you developed working code already, I think that it is trivial to add 'psi'?

Just add
rlnAnglePsi
to
angles = star_data['particles'][['rlnAngleRot', 'rlnAngleTilt']]

and change
hb = ax.hexbin(angles.rlnAngleRot, angles.rlnAngleTilt, bins='log', cmap=colormap, gridsize=gridsize)
similarly (as user specified an option)?

Thanks!

(base) [kimd999@glogin2 angdist]$ pip install angdist

WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see pypa/pip#5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. A future version of pip will drop support for Python 2.7. More details about Python 2 support in pip, can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support
Defaulting to user installation because normal site-packages is not writeable
ERROR: Could not find a version that satisfies the requirement angdist (from versions: none)
ERROR: No matching distribution found for angdist
WARNING: You are using pip version 20.0.2; however, version 20.3.4 is available.

You should consider upgrading via the '/home/scicons/cascade/apps/eman2.3.1/bin/python -m pip install --upgrade pip' command.