Topic: cryoem Goto Github
Some thing interesting about cryoem
Some thing interesting about cryoem
cryoem,Keras scripts
User: bioinsilico
cryoem,Scipion (Cryo em image processing framework (https://scipion.i2pc.es/)) adapted to run in Kubernetes.
Organization: cerit-sc
cryoem,Web Portal for deploying Scipion-in-K8S instances (https://github.com/CERIT-SC/scipion-docker)
Organization: cerit-sc
cryoem,example set up for Relion on AWS ParallelCluster for CryoEM
User: daisukemiyamoto
cryoem,The Swiss Army knife for carbohydrate structure validation, refinement and analysis
User: glycojones
cryoem,Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles
User: guillawme
Home Page: https://pypi.org/project/angdist
cryoem,Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION
User: guillawme
Home Page: https://pypi.org/project/classconvergence
cryoem,Report the number of particles in each class from a run_data.star file produced by RELION
User: guillawme
Home Page: https://pypi.org/project/countparticles
cryoem,Plot the histogram of local resolution values of a cryo-EM reconstruction
User: guillawme
Home Page: https://pypi.org/project/localres
cryoem,Plot metrics from a Topaz training run
User: guillawme
Home Page: https://pypi.org/project/topaztrainmetrics
cryoem,Python3 tools for simulating cryoEM particle data.
User: hbhargava7
cryoem,Overcoming the preferred orientation problem in cryoEM with self-supervised deep-learning
Organization: isonet-cryoet
Home Page: https://www.biorxiv.org/content/10.1101/2024.04.11.588921v1
cryoem,register 3D point clouds using rotation, translation, and scale transformations.
User: jewettaij
Home Page: https://jensenlab.caltech.edu/
cryoem,volumetric image toolkit for simple feature detection (segment tomograms)
User: jewettaij
cryoem,TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
Organization: kudryashevlab
Home Page: https://github.com/KudryashevLab/TomoBEAR/wiki
cryoem,A collaborative list of awesome CryoEM (Cryo Electron Microscopy) resources.
User: kuixu
cryoem,A Docker-based distribution of Appion-Protomo.
Organization: nysbc
cryoem,A curated list of awesome computational cryo-EM methods.
User: phonchi
cryoem,A Framework for Orientation Recovery with Uncertainty Measurement in Cryo-EM Image Analysis
User: phonchi
cryoem,A lightweight script to monitor RELION jobs and send information over Slack DMs
User: plethorachutney
cryoem,helper scripts for Electron microscopy data processing
User: rajanprabu
cryoem,Datatypes for the ribosome.
User: rtviii
Home Page: htpps://ribosome.xyz
cryoem,Scipion plugin for ModelAngelo: an automatic atomic model building program for cryo-EM maps. With or without providing a sequence.
Organization: scipion-em
cryoem,KLT picker: Particle picking using data-driven optimal templates (Python version)
Organization: shkolniskylab
cryoem,KLT picker: Particle picking using data-driven optimal templates (MATLAB version)
Organization: shkolniskylab
cryoem,Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.
User: tbepler
cryoem,.MRC and .EM thumbnailer for GNOME
User: the-lay
Home Page: https://gubins.lv/posts/thumbnailer/
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