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n5-ij Build Status

ImageJ convenience layer for N5

Build into your Fiji installation:

mvn -Dimagej.app.directory=/home/saalfelds/packages/Fiji.app clean install

Then, in Fiji's Scriptin Interpreter (Plugins > Scripts > Scripting Interpreter), load an N5 dataset into an ImagePlus:

import org.janelia.saalfeldlab.n5.*;
import org.janelia.saalfeldlab.n5.ij.*;

imp = N5IJUtils.load(new N5FSReader("/home/saalfelds/example.n5"), "/volumes/raw");

or save an ImagePlus into an N5 dataset:

import ij.IJ;
import org.janelia.saalfeldlab.n5.*;
import org.janelia.saalfeldlab.n5.ij.*;

N5IJUtils.save(
    IJ.getImage(),
    new N5FSWriter("/home/saalfelds/example.n5"),
    "/volumes/raw",
    new int[] {128, 128, 64},
    new GzipCompression()
);

More to come...

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