ihh Goto Github PK
Name: Ian Holmes
Type: User
Company: UC Berkeley
Bio: time to larn those machines a thing or two about human nature
Twitter: ianholmes
Location: SF Bay Area
Blog: http://holmeslab.org/
Ian Holmes's Projects
gfftools
Perl scripts for working with the GFF format
gp120sim
Indel Historian simulation benchmark
grained
Generate animated noise texture with grained.js
graphgram
Graph grammar library
guile-json
A basic JSON parser written in Guile scheme
haplotypes
Visualizing evolution as a network of shared mutations
hg19-perl
Perl scripts for munging UCSC hg19 table dumps
hornswaggle
hyena
JAX/Flax implementation of the Hyena Hierarchy
ihh.github.io
Holmes lab website
indel-review
ipip
jaccuse
J'accuse!
jbrowse
AJAX Genome Browser
jbrowse-analytics
jbrowser-paper
Repo for the paper describing JBrowseR
jukes-cantor
Jukes-Cantor formula and distance matrix
klib
A standalone and lightweight C library
latex-inputs
LaTeX bibliography
latex-tutorial
llm
Access large language models from the command-line
logsumexp
JavaScript implementation of logsumexp via (tabulated) softplus
naivechain
A blockchain implementation in 200 lines of code
nanocall
An Oxford Nanopore Basecaller
nanopair
nanopair-data
noisy-logit
phylogenetic-likelihood
JavaScript implementation of phylogenetic likelihood calculations
picaro
pixelzoo
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